IL_4V6I_101

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UGAAGC*GUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_101 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2688

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6I|1|DA|U|834
4V6I|1|DA|G|835
4V6I|1|DA|A|836
4V6I|1|DA|A|837
4V6I|1|DA|G|838
4V6I|1|DA|C|839
*
4V6I|1|DA|G|854
4V6I|1|DA|U|855
4V6I|1|DA|G|856
4V6I|1|DA|G|857
4V6I|1|DA|A|858
4V6I|1|DA|G|859

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain Bm

60S ribosomal protein rpL43 (L37ae)