IL_4V6I_123

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

4V6I|1|DA|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_123 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.2497

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V6I|1|DA|U|1218
4V6I|1|DA|C|1219
4V6I|1|DA|U|1220
4V6I|1|DA|A|1221
4V6I|1|DA|G|1222
4V6I|1|DA|A|1223
4V6I|1|DA|C|1224
4V6I|1|DA|A|1225
4V6I|1|DA|G|1226
*
4V6I|1|DA|C|1283
4V6I|1|DA|C|1284
4V6I|1|DA|G|1285
4V6I|1|DA|A|1286
4V6I|1|DA|A|1287

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein rpL9 (L6p)

Chain BS

60S ribosomal protein rpL20 (L18ae)

Chain Bs

60S acidic ribosomal protein rpP0 (L10P)