IL_4V6I_134
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 4V6I|1|DA|A|1588, 4V6I|1|DA|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_134 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.2503
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4V6I|1|DA|C|1532
4V6I|1|DA|U|1533
4V6I|1|DA|A|1534
4V6I|1|DA|A|1535
4V6I|1|DA|G|1536
*
4V6I|1|DA|C|1585
4V6I|1|DA|G|1586
4V6I|1|DA|A|1587
4V6I|1|DA|A|1588
4V6I|1|DA|A|1589
4V6I|1|DA|G|1590
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
- Chain Bp
- 60S ribosomal protein rpL40 (L40e)
- Chain DB
- 5.8S ribosomal RNA; 5.8S rRNA
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