IL_4V6I_143

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_143 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.1964

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V6I|1|DA|A|1883
4V6I|1|DA|A|1884
4V6I|1|DA|U|1885
4V6I|1|DA|A|1886
4V6I|1|DA|A|1887
4V6I|1|DA|U|1888
4V6I|1|DA|G|1889
*
4V6I|1|DA|C|2346
4V6I|1|DA|U|2347
4V6I|1|DA|A|2348
4V6I|1|DA|U|2349

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain BV

60S ribosomal protein rpL17 (L22p)

Chain Bg

60S ribosomal protein rpL31 (L31e)