IL_4V6I_158

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

4V6I|1|DA|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_158 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.1375

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V6I|1|DA|U|2200
4V6I|1|DA|G|2201
*
4V6I|1|DA|U|2241
4V6I|1|DA|A|2242
4V6I|1|DA|A|2243
4V6I|1|DA|A|2244

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain CA

Small subunit ribosomal RNA; SSU rRNA