IL_4V6I_172
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_172 not in the Motif Atlas
- Homologous match to IL_5TBW_099
- Geometric discrepancy: 0.5576
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
4V6I|1|DA|C|2666
4V6I|1|DA|A|2667
4V6I|1|DA|U|2668
*
4V6I|1|DA|A|2686
4V6I|1|DA|G|2687
4V6I|1|DA|U|2688
4V6I|1|DA|A|2689
4V6I|1|DA|G|2690
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BE
- 60S ribosomal protein rpL11 (L5p)
- Chain BQ
- 60S ribosomal protein rpL5 (L18p)
- Chain BU
- 60S ribosomal protein rpL21 (L21e)
- Chain DC
- 5S ribosomal RNA; 5S rRNA
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