IL_4V6I_190

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

4V6I|1|DA|C|3093

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_190 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.3694

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4V6I|1|DA|U|3047
4V6I|1|DA|A|3048
4V6I|1|DA|A|3049
4V6I|1|DA|U|3050
4V6I|1|DA|U|3051
*
4V6I|1|DA|A|3091
4V6I|1|DA|C|3092
4V6I|1|DA|C|3093
4V6I|1|DA|A|3094

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain BM

60S ribosomal protein rpL23 (L14p)

Chain BZ

60S ribosomal protein rpL24 (L24e)