IL_4V6I_211

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

4V6I|1|CA|U|313, 4V6I|1|CA|U|350, 4V6I|1|CA|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_211 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.2786

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

4V6I|1|CA|U|311
4V6I|1|CA|A|312
4V6I|1|CA|U|313
4V6I|1|CA|C|314
4V6I|1|CA|A|315
4V6I|1|CA|A|316
*
4V6I|1|CA|U|348
4V6I|1|CA|U|349
4V6I|1|CA|U|350
4V6I|1|CA|C|351
4V6I|1|CA|A|352
4V6I|1|CA|A|353
4V6I|1|CA|C|354
4V6I|1|CA|G|355

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AL

40S ribosomal protein rpS23 (S12p)

Chain AP

40S ribosomal protein rpS11 (S17p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA