IL_4V6K_047

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V6K|1|AB|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_047 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2612

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

4V6K|1|AB|C|1208
4V6K|1|AB|U|1209
4V6K|1|AB|G|1210
4V6K|1|AB|C|1211
4V6K|1|AB|G|1212
4V6K|1|AB|A|1213
4V6K|1|AB|A|1214
4V6K|1|AB|G|1215
*
4V6K|1|AB|U|1234
4V6K|1|AB|G|1235
4V6K|1|AB|G|1236
4V6K|1|AB|A|1237
4V6K|1|AB|G|1238

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AR

50S ribosomal protein L20