IL_4V6K_100

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_100 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.1549

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V6K|1|AB|U|2680
4V6K|1|AB|C|2681
4V6K|1|AB|A|2682
4V6K|1|AB|C|2683
4V6K|1|AB|U|2684
*
4V6K|1|AB|A|2725
4V6K|1|AB|A|2726
4V6K|1|AB|A|2727

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AL

50S ribosomal protein L14

Chain AQ

50S ribosomal protein L19