IL_4V6L_037

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

4V6L|1|AA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_037 not in the Motif Atlas

Geometric match to IL_5H1K_001

Geometric discrepancy: 0.2203

The information below is about IL_5H1K_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4V6L|1|AA|G|925
4V6L|1|AA|G|926
4V6L|1|AA|G|927
4V6L|1|AA|G|928
*
4V6L|1|AA|C|1389
4V6L|1|AA|U|1390
4V6L|1|AA|U|1391

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

mRNA

Chain AI

30S ribosomal protein S5

Chain AY

30S ribosomal protein S21