IL_4V6L_047

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

UGUC*GUCAA

Length

9 nucleotides

Bulged bases

4V6L|1|AA|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6L_047 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3225

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6L|1|AA|U|1060
4V6L|1|AA|G|1061
4V6L|1|AA|U|1062
4V6L|1|AA|C|1063
*
4V6L|1|AA|G|1193
4V6L|1|AA|U|1194
4V6L|1|AA|C|1195
4V6L|1|AA|A|1196
4V6L|1|AA|A|1197

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain AD

mRNA

Chain AG

30S ribosomal protein S3

Chain AI

30S ribosomal protein S5

Chain AN

30S ribosomal protein S10

Chain AR

30S ribosomal protein S14