IL_4V6M_065

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_065 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.1563

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V6M|1|AA|A|1430
4V6M|1|AA|A|1431
4V6M|1|AA|G|1432
4V6M|1|AA|A|1433
4V6M|1|AA|A|1434
4V6M|1|AA|G|1435
*
4V6M|1|AA|C|1466
4V6M|1|AA|C|1467
4V6M|1|AA|A|1468
4V6M|1|AA|C|1469
4V6M|1|AA|U|1470

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain B8

Large subunit ribosomal RNA; LSU rRNA

Chain BP

50S ribosomal protein L19