IL_4V6M_068

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_068 not in the Motif Atlas

Homologous match to IL_5E81_371

Geometric discrepancy: 0.3622

The information below is about IL_5E81_371

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V6M|1|AV|G|30
4V6M|1|AV|U|31
4V6M|1|AV|C|32
*
4V6M|1|AV|G|40
4V6M|1|AV|U|41
4V6M|1|AV|C|42

Current chains

Chain AV

FtsQ nascent chain

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AI

30S ribosomal protein S9

Chain AM

30S ribosomal protein S13

Chain B8

Large subunit ribosomal RNA; LSU rRNA