IL_4V6M_111

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V6M|1|B8|U|1033

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_111 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0677

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V6M|1|B8|G|1031
4V6M|1|B8|A|1032
4V6M|1|B8|U|1033
4V6M|1|B8|G|1034
*
4V6M|1|B8|C|1121
4V6M|1|B8|G|1122
4V6M|1|B8|C|1123

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BM

50S ribosomal protein L16