IL_4V6M_114

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V6M|1|B8|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_114 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.3286

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4V6M|1|B8|G|1059
4V6M|1|B8|U|1060
4V6M|1|B8|U|1061
4V6M|1|B8|G|1062
*
4V6M|1|B8|C|1076
4V6M|1|B8|A|1077
4V6M|1|B8|U|1078
4V6M|1|B8|C|1079

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BI

50S ribosomal protein L11