IL_4V6M_184

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UAAG*CGUUAUAA

Length

12 nucleotides

Bulged bases

4V6M|1|B8|U|100, 4V6M|1|B8|A|101, 4V6M|1|B8|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6M_184 not in the Motif Atlas

Geometric match to IL_1U63_003

Geometric discrepancy: 0.3361

The information below is about IL_1U63_003

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_24134.1

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4V6M|1|B8|U|82
4V6M|1|B8|A|83
4V6M|1|B8|A|84
4V6M|1|B8|G|85
*
4V6M|1|B8|C|97
4V6M|1|B8|G|98
4V6M|1|B8|U|99
4V6M|1|B8|U|100
4V6M|1|B8|A|101
4V6M|1|B8|U|102
4V6M|1|B8|A|103
4V6M|1|B8|A|104

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BU

50S ribosomal protein L24

Chain BY

50S ribosomal protein L29