IL_4V6N_044

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V6N|1|AB|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_044 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.3362

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4V6N|1|AB|G|1059
4V6N|1|AB|U|1060
4V6N|1|AB|U|1061
4V6N|1|AB|G|1062
*
4V6N|1|AB|C|1076
4V6N|1|AB|A|1077
4V6N|1|AB|U|1078
4V6N|1|AB|C|1079

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AJ

50S ribosomal protein L10

Chain AK

50S ribosomal protein L11