IL_4V6N_072

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4V6N|1|AB|A|1801, 4V6N|1|AB|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_072 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1853

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V6N|1|AB|U|1798
4V6N|1|AB|G|1799
4V6N|1|AB|C|1800
4V6N|1|AB|A|1801
4V6N|1|AB|A|1802
4V6N|1|AB|A|1803
4V6N|1|AB|C|1804
*
4V6N|1|AB|G|1813
4V6N|1|AB|G|1814
4V6N|1|AB|A|1815
4V6N|1|AB|C|1816
4V6N|1|AB|G|1817
4V6N|1|AB|U|1818
4V6N|1|AB|A|1819
4V6N|1|AB|U|1820
4V6N|1|AB|A|1821

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA