IL_4V6N_129

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

ACAAUG*UGAU

Length

10 nucleotides

Bulged bases

4V6N|1|BA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_129 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3765

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V6N|1|BA|A|371
4V6N|1|BA|C|372
4V6N|1|BA|A|373
4V6N|1|BA|A|374
4V6N|1|BA|U|375
4V6N|1|BA|G|376
*
4V6N|1|BA|U|387
4V6N|1|BA|G|388
4V6N|1|BA|A|389
4V6N|1|BA|U|390

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BS

30S ribosomal protein S16

Chain BW

30S ribosomal protein S20