IL_4V6O_112

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V6O|1|BB|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_112 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.4764

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4V6O|1|BB|G|1059
4V6O|1|BB|U|1060
4V6O|1|BB|U|1061
4V6O|1|BB|G|1062
*
4V6O|1|BB|C|1076
4V6O|1|BB|A|1077
4V6O|1|BB|U|1078
4V6O|1|BB|C|1079

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L10

Chain BK

50S ribosomal protein L11