IL_4V6O_135

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V6O|1|BB|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_135 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.1385

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V6O|1|BB|C|1686
4V6O|1|BB|G|1687
4V6O|1|BB|U|1688
4V6O|1|BB|A|1689
4V6O|1|BB|A|1690
4V6O|1|BB|C|1691
*
4V6O|1|BB|G|1696
4V6O|1|BB|G|1697
4V6O|1|BB|A|1698
4V6O|1|BB|G|1699
4V6O|1|BB|A|1700
4V6O|1|BB|A|1701
4V6O|1|BB|G|1702

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2