IL_4V6O_235

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_235 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2404

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

4V6O|1|BB|U|1720
4V6O|1|BB|G|1721
4V6O|1|BB|A|1722
4V6O|1|BB|G|1723
4V6O|1|BB|G|1724
4V6O|1|BB|U|1725
*
4V6O|1|BB|A|1735
4V6O|1|BB|U|1736
4V6O|1|BB|G|1737
4V6O|1|BB|G|1738
4V6O|1|BB|A|1739
4V6O|1|BB|G|1740

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains