IL_4V6O_238

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_238 not in the Motif Atlas

Geometric match to IL_1Z79_002

Geometric discrepancy: 0.2548

The information below is about IL_1Z79_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V6O|1|BB|C|2676
4V6O|1|BB|G|2677
4V6O|1|BB|C|2678
*
4V6O|1|BB|G|2729
4V6O|1|BB|C|2730
4V6O|1|BB|G|2731

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L14