IL_4V6P_009

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGAAA*UGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_009 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3079

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4V6P|1|AA|G|127
4V6P|1|AA|G|128
4V6P|1|AA|A|129
4V6P|1|AA|A|130
4V6P|1|AA|A|131
*
4V6P|1|AA|U|231
4V6P|1|AA|G|232
4V6P|1|AA|C|233
4V6P|1|AA|C|234

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S16

Chain AT

30S ribosomal protein S17

Chain AW

30S ribosomal protein S20