3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
ACAAUG*UGAU
Length
10 nucleotides
Bulged bases
4V6P|1|AA|G|388
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6P_018 not in the Motif Atlas
Geometric match to IL_4V88_408
Geometric discrepancy: 0.3777
The information below is about IL_4V88_408
Detailed Annotation
C-loop with extra cWW pair
Broad Annotation
C-loop
Motif group
IL_11347.2
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

4V6P|1|AA|A|371
4V6P|1|AA|C|372
4V6P|1|AA|A|373
4V6P|1|AA|A|374
4V6P|1|AA|U|375
4V6P|1|AA|G|376
*
4V6P|1|AA|U|387
4V6P|1|AA|G|388
4V6P|1|AA|A|389
4V6P|1|AA|U|390

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AS
30S ribosomal protein S16

Coloring options:


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