IL_4V6P_023

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

AGUAA*UUUGCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_023 not in the Motif Atlas

Geometric match to IL_4WF9_084

Geometric discrepancy: 0.378

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V6P|1|AA|A|456
4V6P|1|AA|G|457
4V6P|1|AA|U|458
4V6P|1|AA|A|459
4V6P|1|AA|A|460
*
4V6P|1|AA|U|471
4V6P|1|AA|U|472
4V6P|1|AA|U|473
4V6P|1|AA|G|474
4V6P|1|AA|C|475
4V6P|1|AA|U|476

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S16