IL_4V6P_036

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4V6P|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_036 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.2431

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4V6P|1|AA|U|684
4V6P|1|AA|G|685
4V6P|1|AA|U|686
4V6P|1|AA|A|687
4V6P|1|AA|G|688
*
4V6P|1|AA|C|699
4V6P|1|AA|G|700
4V6P|1|AA|U|701
4V6P|1|AA|A|702
4V6P|1|AA|G|703
4V6P|1|AA|A|704
4V6P|1|AA|G|705
4V6P|1|AA|A|706

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S11

Chain BB

Large subunit ribosomal RNA; LSU rRNA