IL_4V6P_062
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6P_062 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.2394
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V6P|1|AA|A|1430
4V6P|1|AA|A|1431
4V6P|1|AA|G|1432
4V6P|1|AA|A|1433
4V6P|1|AA|A|1434
4V6P|1|AA|G|1435
*
4V6P|1|AA|C|1466
4V6P|1|AA|C|1467
4V6P|1|AA|A|1468
4V6P|1|AA|C|1469
4V6P|1|AA|U|1470
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AW
- 30S ribosomal protein S20
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BM
- 50S ribosomal protein L14
- Chain BR
- 50S ribosomal protein L19
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