IL_4V6Q_019

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

ACAAUG*UGAU

Length

10 nucleotides

Bulged bases

4V6Q|1|AA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_019 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3717

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V6Q|1|AA|A|371
4V6Q|1|AA|C|372
4V6Q|1|AA|A|373
4V6Q|1|AA|A|374
4V6Q|1|AA|U|375
4V6Q|1|AA|G|376
*
4V6Q|1|AA|U|387
4V6Q|1|AA|G|388
4V6Q|1|AA|A|389
4V6Q|1|AA|U|390

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S16

Chain AW

30S ribosomal protein S20