3D structure

PDB id
4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
4V6Q|1|AA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6Q_037 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.2672
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

4V6Q|1|AA|U|684
4V6Q|1|AA|G|685
4V6Q|1|AA|U|686
4V6Q|1|AA|A|687
4V6Q|1|AA|G|688
*
4V6Q|1|AA|C|699
4V6Q|1|AA|G|700
4V6Q|1|AA|U|701
4V6Q|1|AA|A|702
4V6Q|1|AA|G|703
4V6Q|1|AA|A|704
4V6Q|1|AA|G|705
4V6Q|1|AA|A|706

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AN
30S ribosomal protein S11
Chain BB
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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