IL_4V6Q_087

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

4V6Q|1|BB|G|729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_087 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.3515

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V6Q|1|BB|U|702
4V6Q|1|BB|U|703
4V6Q|1|BB|G|704
4V6Q|1|BB|A|705
4V6Q|1|BB|A|706
4V6Q|1|BB|G|707
*
4V6Q|1|BB|U|724
4V6Q|1|BB|G|725
4V6Q|1|BB|G|726
4V6Q|1|BB|A|727
4V6Q|1|BB|G|728
4V6Q|1|BB|G|729
4V6Q|1|BB|A|730

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2