IL_4V6Q_173

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGUU*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_173 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.355

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6Q|1|BB|C|2815
4V6Q|1|BB|G|2816
4V6Q|1|BB|U|2817
4V6Q|1|BB|U|2818
*
4V6Q|1|BB|G|2828
4V6Q|1|BB|A|2829
4V6Q|1|BB|C|2830
4V6Q|1|BB|G|2831

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BP

50S ribosomal protein L17