IL_4V6Q_181

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_181 not in the Motif Atlas

Geometric match to IL_7ECN_001

Geometric discrepancy: 0.2832

The information below is about IL_7ECN_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V6Q|1|AA|G|769
4V6Q|1|AA|C|770
4V6Q|1|AA|G|771
*
4V6Q|1|AA|C|808
4V6Q|1|AA|G|809
4V6Q|1|AA|C|810

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AR

30S ribosomal protein S15

Chain BB

Large subunit ribosomal RNA; LSU rRNA