IL_4V6R_110

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

4V6R|1|BB|G|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6R_110 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3627

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4V6R|1|BB|C|1196
4V6R|1|BB|G|1197
4V6R|1|BB|U|1198
4V6R|1|BB|U|1199
*
4V6R|1|BB|A|1246
4V6R|1|BB|A|1247
4V6R|1|BB|G|1248
4V6R|1|BB|U|1249
4V6R|1|BB|G|1250

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15

Chain BS

50S ribosomal protein L20