IL_4V6S_066

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V6S|1|AB|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_066 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.2153

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V6S|1|AB|C|1686
4V6S|1|AB|G|1687
4V6S|1|AB|U|1688
4V6S|1|AB|A|1689
4V6S|1|AB|A|1690
4V6S|1|AB|C|1691
*
4V6S|1|AB|G|1696
4V6S|1|AB|G|1697
4V6S|1|AB|A|1698
4V6S|1|AB|G|1699
4V6S|1|AB|A|1700
4V6S|1|AB|A|1701
4V6S|1|AB|G|1702

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA