IL_4V6S_133
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V6S|1|BA|A|532, 4V6S|1|BA|U|534, 4V6S|1|BA|A|535
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6S_133 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2721
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V6S|1|BA|G|515
4V6S|1|BA|PSU|516
4V6S|1|BA|G|517
4V6S|1|BA|C|518
4V6S|1|BA|C|519
4V6S|1|BA|A|520
4V6S|1|BA|G|521
*
4V6S|1|BA|C|528
4V6S|1|BA|G|529
4V6S|1|BA|G|530
4V6S|1|BA|U|531
4V6S|1|BA|A|532
4V6S|1|BA|A|533
4V6S|1|BA|U|534
4V6S|1|BA|A|535
4V6S|1|BA|C|536
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BB
- mRNA
- Chain BE
- 30S ribosomal protein S3
- Chain BF
- 30S ribosomal protein S4
- Chain BN
- 30S ribosomal protein S12
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