IL_4V6S_164

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6S_164 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.3947

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6S|1|BA|C|1303
4V6S|1|BA|G|1304
4V6S|1|BA|G|1305
4V6S|1|BA|A|1306
4V6S|1|BA|U|1307
4V6S|1|BA|U|1308
*
4V6S|1|BA|A|1329
4V6S|1|BA|U|1330
4V6S|1|BA|G|1331
4V6S|1|BA|A|1332
4V6S|1|BA|A|1333
4V6S|1|BA|G|1334

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BO

30S ribosomal protein S13

Chain BU

30S ribosomal protein S19