IL_4V6S_177
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- AUAAGUAAC*GUGAAAUU
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6S_177 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.3705
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V6S|1|AB|A|1262
4V6S|1|AB|U|1263
4V6S|1|AB|A|1264
4V6S|1|AB|A|1265
4V6S|1|AB|G|1266
4V6S|1|AB|U|1267
4V6S|1|AB|A|1268
4V6S|1|AB|A|1269
4V6S|1|AB|C|1270
*
4V6S|1|AB|G|2010
4V6S|1|AB|U|2011
4V6S|1|AB|G|2012
4V6S|1|AB|A|2013
4V6S|1|AB|A|2014
4V6S|1|AB|A|2015
4V6S|1|AB|U|2016
4V6S|1|AB|U|2017
Current chains
- Chain AB
- 23S ribomosomal RNA
Nearby chains
- Chain A3
- 50S ribosomal protein L32
- Chain AE
- 50S ribosomal protein L3
- Chain AF
- 50S ribosomal protein L4
- Chain AP
- 50S ribosomal protein L17
- Chain AS
- 50S ribosomal protein L20
- Chain AU
- 50S ribosomal protein L22
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