IL_4V6T_025

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V6T|1|AA|A|532, 4V6T|1|AA|U|534, 4V6T|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_025 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1575

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V6T|1|AA|G|515
4V6T|1|AA|U|516
4V6T|1|AA|G|517
4V6T|1|AA|C|518
4V6T|1|AA|C|519
4V6T|1|AA|A|520
4V6T|1|AA|G|521
*
4V6T|1|AA|C|528
4V6T|1|AA|G|529
4V6T|1|AA|G|530
4V6T|1|AA|U|531
4V6T|1|AA|A|532
4V6T|1|AA|A|533
4V6T|1|AA|U|534
4V6T|1|AA|A|535
4V6T|1|AA|C|536

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12

Chain AY

elongation factor G