IL_4V6T_034

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4V6T|1|AA|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_034 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0844

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4V6T|1|AA|U|684
4V6T|1|AA|G|685
4V6T|1|AA|U|686
4V6T|1|AA|A|687
4V6T|1|AA|G|688
*
4V6T|1|AA|C|699
4V6T|1|AA|G|700
4V6T|1|AA|U|701
4V6T|1|AA|A|702
4V6T|1|AA|G|703
4V6T|1|AA|A|704
4V6T|1|AA|G|705
4V6T|1|AA|A|706

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA