IL_4V6T_107

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V6T|1|BA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_107 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0899

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V6T|1|BA|G|1031
4V6T|1|BA|A|1032
4V6T|1|BA|U|1033
4V6T|1|BA|G|1034
*
4V6T|1|BA|C|1121
4V6T|1|BA|G|1122
4V6T|1|BA|C|1123

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16