IL_4V6T_139

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4V6T|1|BA|A|1801, 4V6T|1|BA|C|1816, 4V6T|1|BA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_139 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0507

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V6T|1|BA|U|1798
4V6T|1|BA|G|1799
4V6T|1|BA|C|1800
4V6T|1|BA|A|1801
4V6T|1|BA|A|1802
4V6T|1|BA|A|1803
4V6T|1|BA|C|1804
*
4V6T|1|BA|G|1813
4V6T|1|BA|G|1814
4V6T|1|BA|A|1815
4V6T|1|BA|C|1816
4V6T|1|BA|G|1817
4V6T|1|BA|U|1818
4V6T|1|BA|A|1819
4V6T|1|BA|U|1820
4V6T|1|BA|A|1821

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2