IL_4V6T_195

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UGAAGG*CUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6T_195 not in the Motif Atlas

Homologous match to IL_7A0S_018

Geometric discrepancy: 0.1884

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

4V6T|1|BA|U|703
4V6T|1|BA|G|704
4V6T|1|BA|A|705
4V6T|1|BA|A|706
4V6T|1|BA|G|707
4V6T|1|BA|G|708
*
4V6T|1|BA|C|723
4V6T|1|BA|U|724
4V6T|1|BA|G|725
4V6T|1|BA|G|726
4V6T|1|BA|A|727
4V6T|1|BA|G|728

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2