IL_4V6X_004
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_004 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1706
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V6X|1|A5|C|30
4V6X|1|A5|U|31
4V6X|1|A5|G|32
4V6X|1|A5|A|33
4V6X|1|A5|A|34
4V6X|1|A5|U|35
4V6X|1|A5|U|36
4V6X|1|A5|U|37
*
4V6X|1|A5|A|44
4V6X|1|A5|U|45
4V6X|1|A5|U|46
4V6X|1|A5|A|47
4V6X|1|A5|G|48
4V6X|1|A5|U|49
4V6X|1|A5|C|50
4V6X|1|A5|A|51
4V6X|1|A5|G|52
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain CL
- 60S ribosomal protein L13
- Chain CN
- 60S ribosomal protein L15
- Chain Ca
- 60S ribosomal protein L27a
- Chain Cj
- 60S ribosomal protein L37
- Chain Co
- 60S ribosomal protein L36a
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