IL_4V6X_029

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

4V6X|1|A5|A|509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_029 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.3668

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V6X|1|A5|G|508
4V6X|1|A5|A|509
4V6X|1|A5|U|510
4V6X|1|A5|C|511
*
4V6X|1|A5|G|648
4V6X|1|A5|A|649
4V6X|1|A5|C|650

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L13

Chain Ca

60S ribosomal protein L27a