IL_4V6X_076
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 4V6X|1|A5|U|1930, 4V6X|1|A5|C|1931, 4V6X|1|A5|G|2055, 4V6X|1|A5|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_076 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.1458
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V6X|1|A5|C|1926
4V6X|1|A5|U|1927
4V6X|1|A5|C|1928
4V6X|1|A5|A|1929
4V6X|1|A5|U|1930
4V6X|1|A5|C|1931
4V6X|1|A5|A|1932
4V6X|1|A5|G|1933
*
4V6X|1|A5|C|2053
4V6X|1|A5|U|2054
4V6X|1|A5|G|2055
4V6X|1|A5|G|2056
4V6X|1|A5|A|2057
4V6X|1|A5|G|2058
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain CH
- 60S ribosomal protein L9
- Chain CM
- 60S ribosomal protein L14
- Chain CO
- 60S ribosomal protein L13a
- Chain CS
- 60S ribosomal protein L18a
- Chain Cm
- 60S ribosomal protein L40
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