IL_4V6X_079

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

4V6X|1|A5|A|1960

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_079 not in the Motif Atlas

Geometric match to IL_5TBW_054

Geometric discrepancy: 0.2846

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V6X|1|A5|U|1957
4V6X|1|A5|A|1958
4V6X|1|A5|U|1959
4V6X|1|A5|A|1960
4V6X|1|A5|G|1961
4V6X|1|A5|A|1962
4V6X|1|A5|C|1963
4V6X|1|A5|A|1964
4V6X|1|A5|G|1965
*
4V6X|1|A5|C|2022
4V6X|1|A5|C|2023
4V6X|1|A5|G|2024
4V6X|1|A5|A|2025
4V6X|1|A5|A|2026

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CS

60S ribosomal protein L18a

Chain Cq

60S acidic ribosomal protein P0