IL_4V6X_088

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_088 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1224

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V6X|1|A5|G|2358
4V6X|1|A5|U|2359
4V6X|1|A5|A|2360
4V6X|1|A5|G|2361
4V6X|1|A5|U|2362
4V6X|1|A5|A|2363
4V6X|1|A5|G|2364
*
4V6X|1|A5|C|3858
4V6X|1|A5|G|3859
4V6X|1|A5|A|3860
4V6X|1|A5|A|3861
4V6X|1|A5|A|3862
4V6X|1|A5|C|3863

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

60S ribosomal protein L4

Chain CP

60S ribosomal protein L17