IL_4V6X_090
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 4V6X|1|A5|A|2512, 4V6X|1|A5|A|2513
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_090 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.1788
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4V6X|1|A5|C|2446
4V6X|1|A5|U|2447
4V6X|1|A5|G|2448
4V6X|1|A5|A|2449
4V6X|1|A5|G|2450
*
4V6X|1|A5|C|2509
4V6X|1|A5|G|2510
4V6X|1|A5|A|2511
4V6X|1|A5|A|2512
4V6X|1|A5|A|2513
4V6X|1|A5|G|2514
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- 60S ribosomal protein L8
- Chain Cg
- 60S ribosomal protein L34
- Chain Cj
- 60S ribosomal protein L37
- Chain Cl
- 60S ribosomal protein L39
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